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Detection of Luciferase Expression in C4-2B Luc1 Cells by Flow Cytometry

  • AcceGen R&D Team
  • Dec 19, 2025
  • 61

Function of Luciferase Reporter Cell Lines

Luciferase reporter cell lines utilize luciferase expression as a bioluminescent marker to monitor specific biological processes. When a luciferase-specific substrate is introduced, the enzyme catalyzes a light-producing reaction, enabling researchers to visualize and quantitatively measure gene expression, signaling pathway activation, or protein-protein interactions. This system provides a high signal-to-noise ratio, which is particularly advantageous in drug screening and mechanistic studies of disease.

 

In these engineered cell lines, the luciferase gene is placed under the control of a defined promoter, response element, or fused to a gene of interest. Activation of the regulatory element by transcription factors or signaling molecules leads to transcription of luciferase mRNA and subsequent translation into the functional enzyme. The luciferase enzyme then catalyzes its substrate, releasing detectable photons. The emitted bioluminescence, measured by instruments such as luminometers, correlates directly with the activity of the pathway under investigation.

 

Owing to their high sensitivity and dynamic range, luciferase reporter systems are widely employed in gene expression analysis, signal transduction research, and drug discovery. They permit detection of subtle transcriptional changes and yield reproducible data suitable for downstream validation. Furthermore, these reporter systems are adaptable to various experimental formats, including cell-based assays, three-dimensional culture models, and in vivo imaging. Essentially, luciferase serves as a reporter gene that converts a molecular event into a quantifiable optical signal.

 

Flow Cytometry Detection of Immunostained Luciferase Reporter Cells

 

We have developed a flow cytometry-based method to detect luciferase reporter expression at the single-cell level. This approach utilizes immunostaining with an antibody specific for the Luc1 variant of luciferase in the C4-2B Luc1 stable cell line. The assay was optimized and validated to ensure robust detection of luciferase protein. By calculating the fold-change in fluorescence intensity relative to control cells, this method achieves high precision and reproducibility. Consequently, it allows accurate, high-throughput quantification of reporter expression across individual cells within a population.

 

Experimental Section

Aim

To detect the expressed positive cell population of Luciferase in C4-2B Luc1 cells by flow cytometry.

Materials and Reagents

 

Name Manufacture Cat# Lot#
dPBS Gibco 10010-023 500ML 3013794
HI FBS Heat Inactivated Fetal Bovine Serum Gibco 10438-026 2535232RP
Human TruStain FcX™ (Fc Receptor Blocking Solution) 200X Biolegend 422302 B443035
Aqua fluorescent reactive dye Invetrogen L34966A 2983213
FOXP3 Fixation/Permeabilization Buffer(100-test) Biolegend 421403 B435799
Firefly luciferase Recombinant Rabbit Monoclonal Antibody (HL2164) ThermoFisher MA550410 79704002
Goat anti-Rabbit IgG (Heavy chain) Superclonal™ Secondary Antibody, Alexa Fluor™ Plus 647 Scientific A5505550UL 3318841
96-well u-bottom plate LabForce 210AAM447 022824A001

 

Cell info Testing for
C4-2B Luc1 Testing cell line for Luc1 expression

 

Instrument

Invitrogen™, Attune™ NxT Flow Cytometer

 

Procedure

1. Collect all cells into a 15 ml centrifuge.

2. Spin cells at 300g for 5 min.

3. Resuspend cells with dPBS.

4. Count cell density.

5. Load 1.0E+06 cells/well of 96-well plate per each cell line detailed in the plate map shown below.

 

Cell Staining info
C4-2B Luc1 Live/Dead staining only
C4-2B Luc1 AF-647-2nd antibody only
C4-2B Luc1 Stain for Luc1 + AF-647-2nd antibody

 

6. Spin cells at 300g for 5 min.

7. Wash cells once with cold-dPBS.

8. Spin cells at 300g for 5 min.

9. Resuspend cells in Live/Dead solution except the cells for No staining detailed below.

 

Reagent Dilution Volume (μl)/Each
Aqua fluorescent reactive dye 1000X 0.1
dPBS 99.9

 

10. Incubate at 4°C for 15 min.

11. Add 150 μl ddPBS/well.

12. Spin cells at 300g for 5 min.

13. Remove the supernatant.

14. Add 1X working concentration of Fix/Perm 200 μl/well.

15. Incubate at room temperature for 20 min in dark.

16. Spin cells at 300g for 5 min.

17. Wash cells with dPBS at 200 μl/well.

18. Spin cells at 300g for 5 min.

19. Wash cells once with 1X Perm buffer at 200 μl/well.

20. Spin cells at 300g for 5 min.

21. Add diluted Human TruStain FcX™ (Fc Receptor Blocking Solution) 100 μl/well.

22. Incubate at 4°C for 15 min.

23. Spin cells at 300g for 5 min.

24. Resuspend cells in 100 μl of diluted either anti-Firefly Luciferase Antibody solution or dPBS (for IgG control antibody only) per well (dilution factor shown below).

 

Manufacture Cat# Dilution
Firefly luciferase Recombinant Rabbit Monoclonal Antibody ThermoFisher Scientific MA550410 1:500
Goat anti-Rabbit IgG (Heavy chain) Superclonal™ Secondary Antibody, Alexa Fluor™ Plus 647 ThermoFisher Scientific A5505550UL 1:1000

 

25. Incubate at 4°C for 30 min in dark.

26. Add 100 μl cold dPBS/well.

27 . Spin cells at 300g for 5 min.

28. Resuspend cells in diluted Goat anti-Rabbit IgG (Heavy chain) Superclonal™ Secondary Antibody solution at 100 μl/well.

30. Incubate at 4°C for 20-30 min in dark.

31. Add 100 μl cold dPBS/well.

32. Spin cells at 300g for 5 min.

33. Wash cells with dPBS once with keeping in dark.

34. Spin cells at 300g for 5 min.

35. Resuspend cells in dPBS with keeping in dark, following running flow on flow cytometry, otherwise resuspend cells in 1X flow buffer with keeping in dark. Keep the cells at 4°C for flow.

 

Flow Data Report

Gating info

 

 

Flow Data

 

 

Result

1. The anti-Firefly Luciferase Antibody exhibits specific binding to luciferase expression in C4-2B Luc1 cells.

2. 97.6% of the C4-2B Luc1 cell population shows positive Luc1 expression.

 

Conclusion

Luciferase reporters remain a widely utilized tool in biological research due to their convenience, sensitivity, and suitability for high-throughput applications. A broad selection of luciferase-expressing reporter cell lines, including the C4-2B Luc1 line described here, is available through AcceGen. The flow cytometric assay presented is not only applicable to Luc1-based cell lines but can also be extended to other luciferase reporter systems. Although the current antibody does not recognize the Luc2 variant, future incorporation of antibodies targeting additional luciferase isoforms, such as Luc2, would further broaden the utility of this approach. Such development would enhance the applicability of flow cytometry for quality control and functional validation of diverse luciferase reporter cell lines.

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